Glioblastoma (GBM) is the most aggressive type of brain tumor arising from glial cells
accounting for 52% of all parenchymal brain cancer cases and 20% of all intracranial
tumors. GBM has pronounced mitotic activity, substantial tendency toward neoangiogenesis
(microvascular proliferation), necrosis, and high proliferative rates. Because of their
intrinsic infiltrative nature, GBM has a highly aggressive malignant clinical course. The
adjuvant chemo-radiotherapy (RT) with temozolomide (TMZ) after maximal safe resection
remains the standard of care.
Brain cancer is a unique because of the "blood-brain barrier", which severely restricts
the bloodstream of the brain. While the blood brain barrier (BBB) is great for protecting
the brain from danger, when the brain has cancer cells, the BBB can be a problem.
Therefore, it is important to find new drug targets. The mechanisms underlying radio- and
chemo-resistance are poorly understood. Recent studies suggest that up-regulation of the
molecular target of rapamycin (mTOR) plays a pivotal role in determining resistance to
treatment. The upregulation of mTOR in GBM has been reported by multiple experimental and
pathological findings. Moreover, the up-regulation of mTOR is also the key for cell
growth and cell proliferation as demonstrated by in vivo studies. In fact, specific
factors derived from brain endothelial cells maintain glioblastoma stem-like cell
expansion through the mTOR pathway. The key to successful treatment of glioblastoma will
be no doubt in the realization that this clinic is an entity in biologic terms, more than
one disease, and is likely that specific targeted therapies will be effective in
molecularly defined subsets. In this way, the molecular classification of these tumors
will be defined in clinically relevant terms based on the identification of markers that
define subsets and are predictive of response to promising agents. Additional
investigations and identifications of new biomarkers will help to better define the
clinical and biologic subtypes of glioblastoma and an improved disease control. In short,
the brain tumor has peculiar ad personam mutations. This is why the investigators have
decided to set up primary lines starting from the patient's biopsy.
Expected results of the scientific research project:
In the first instance, the primary outcome will be to establish cell cultures and stem
cells that faithfully reproduce in vitro the physiology of the tumor maintaining the same
characteristics of patient's neoplasm. 1. Evaluate the effect of new target drugs on the proliferation of primary and
continuous human glioblastoma cell lines by setting up growth curves and methyl
thiazolyl tetrazolium (MTT) toxicity assays.
2. Screening of natural and synthetic drugs using patient-derived primary glioblastoma
cell lines. 3. Characterize the mechanisms and proteins involved in the apoptotic and / or
autophagic pathway with immunohistochemistry and western blot assays in control and
treated cells.
4. Validation of previously identified molecular targets in preclinical models of brain
cancers. The investigators are able to identify novel molecular determinants that
can be targeted by pharmacological intervention to decrease or block the tumor
growth.
Materials and methods.Tumor Specimen Collection and Cryopreservation.Resection specimens of glioblastoma (GBM) tumors (n = 20) were received sterile and
freshly from Neuromed Neurosurgery. Tumor tissue samples were snap frozen in liquid
nitrogen and stored in the gas phase above liquid nitrogen. Additionally, tumor tissue
cubes (3 × 3 × 3 mm) were frozen vitally. For this procedure, tumor pieces were cut with
a sterile scalpel blade, and 4 tumor pieces were transferred into a sterile cryo-tube in
1.5 ml freezing medium (fetal calf serum containing 10% DMSO), sealed in a freezing
container (Nalgene, Rochester , USA), and placed immediately at -80 ° C. Until thawing,
tubes were kept at -80 ° C (for at maximum of 6 weeks) or, after overnight cooling,
transferred to nitrogen tank (for longer storage periods).
Patient Cohort.Clinical samples from 5 patients with WHO grade IV GBM and 3 patient with a relapsed
Astrocytoma, WHO grade III and one with oligodendroglioma grade III (Table 1) were
collected from the Neurosurgery department at Neuromed IRCCS. Prior informed consent was
obtained.
Tissue Culture and Cell Line Establishment.With written consent from patients and/or in accordance with institutional guidelines,
immediately after the resection collect tumor samples (200-500 mg of tumor is
recommended) into a tube containing cold sterile stem cell media without growth factors.
Transport the specimen immediately to the tissue culture hood for processing.
For surgeries at a remote site, cut the tumor sample into smaller fragments and place
into a tube containing cold sterile stem cell media without growth factors (keep on ice)
for transportation. The tumor can be processed within 2-3 hours after the resection.
Tumor specimens from a pre-clinical animal model of human GBM tumor can also be collected
and processed in the same way.
In sterile BSL II laminar flow hood, place the tumor into a 35 mm petri dish with 3 mL of
Hank's balanced salt solution (HBSS). Wash tumor specimen (2 to 3 times) by transferring
them sequentially to new 35 mm dishes filled with 5 mL HBSS to remove blood and debris.
Aspirate excessive HBSS from the dish. Immediately cut the tumor into small fragments and
mince with a sterile scalpel blade into approximately 1 mm3 fragments. The best yield can
be achieved when tumors are minced to very small pieces. Add 3 mL of enzymatic digestion
mixture (collagenaseD/DNase 1) to the minced tissue and collect the minced tissue with 5
mL disposable pipet, pipetting up and down a few times. Then, transfer the tumor
fragments into 30 mL of pre-warmed enzymatic digestion mixture.The final concentration of
enzymes should be 1 mg collagenase D and 0.1 mg DNase I per milliliter of HBSS. After
digestion tissue single cells were washed and plated . The cell lines were identified
with the first letters of patient's name and surname.
Growth Kinetics.Cells (5×10^5 cells) were plated in 5 ml media in quintuplicate in T25 culture flasks per
cell line and allowed to attach for 48 h; vital cells were assessed by trypan blue
staining and one flask was counted every 24 h for five consecutive days using a Neubauer
chamber.
O6-methylguanine-DNA-methyltransferase (MGMT) promoter methylation analysis.For analyzing the MGMT promoter concerning methylation the MethyLight method was applied.
Briefly, genomic DNA (gDNA) was subject to bisulfite conversion using the Epitect
Bisulfite Kit (Qiagen, Hilden, Germany) according to the manufacturer's recommendations.
A primer/probe combination specific for methylated MGMT promoter sequence was used
(forward: 5'-GCGTTTCGACGTTCGTAGGT-3'; reverse: 5'-CACTCTTCCGAAAACGAAACG-3'; probe:
5'-6FAM-CGCAAACGATACGCACCGCGA-TMR-3'), with SensiFast Probe Kit (Bioline, Luckenwalde,
Germany). Cytosine-phosphate-guanosine (CpG) Methylase (SssI) treated DNA served as
calibrator, as it is considered as fully methylated. The collagenase gene 2A1 (COL2A1),
was used as endogenous control (forward: 5'-TCTAACAATTATAAACTCCAACCACCAA-3'; reverse:
5'-GGGAAGATGGGATAGAAGGGAATAT-3'; probe:
5'-6FAM-CCTTCATTCTAACCCAATACCTATCCCACCTCTAAA-TMR-3'). The percentage of methylated
reference (PMR) value was calculated by dividing the MGMT/COL2A1 ratio of the sample by
the MGMT/COL2A1 ratio of the SssI-treated DNA, and multiplying by 100. Samples with a PMR
value >4 were considered as methylated. All reactions were performed in triplicate.
Mutation analyses.Samples underwent analyses for the following loci: IDH1 R132 (exon 4), IDH2 R172 (exon
4), B-Raf V600 (exon 15), K-Ras G12, G13 (exon 2) and Q61 (exon 3) and TP53 exons 5 to 8.
The desired genomic regions were amplified by PCR using specific primers. The polymerase
chain reaction (PCR) was performed using MyTaqHS polymerase (Bioline) according to the
manufacturer's recommendations. The PCR reaction was controlled by agarose gel
electrophoresis and 15 µl of the products were purified using 3 units of FAST AP™
Alkaline Phosphatase (Fermentas, St. Leon-Rot, Germany) and 30U of Exonuclease I
(Fermentas) by incubation at 37°C for 15 min and subsequent heat inactivation at 85°C for
15 min.
Success Rates.The investigator assessed attachment and outgrowth rates of 2 consecutive WHO grade IV
GBM tumor samples and two relapsed Astrocytoma, when prepared fresh directly after
resection (culture #4). After fresh preparation, cells attached in 100% of the cases. The
four most rapidly and stable outgrowing pairs of cell cultures were subsequently
characterized in detail. In the following, stable outgrowing cultures (could be passaged
>10 times) are termed cell lines. Cell lines derived from fresh material were marked with
the initials of the patient's name and surname to ensure anonymity while respecting the
patient's privacy.
Immunohistochemistry.Representative cell line of each tumour were stained by Immunohistochemistry for
Ki67(proliferation index estimated as a (%) percentage of positive cells in a field of
100), IDH1, ATRX (markers of brain tumors) and GFAP (glial marker) (Ventana, Tucson,
Ariz.) was performed automatically with a Nexes instrument (Ventana). Antibody detection
was performed using a multilink streptavidin-biotin complex method, and antibodies were
visualized by a diaminobenzidine chromagen method. Negative control samples were
incubated with primary antibodies only.
Results.Table 1.Cell line Vimentin GFAP Atrx IDH1 MET.COGI + + + FE +
CL + + +
- - -
CG + FE + - +
PAP + + + + +
DNA + FE + - -
DRA + + + FE -
ZAR 67/19 + FE + - -
VEM + + + + +
DA + - + - +
IP + FE + - -
On these established cell cultures, new substances, including natural substances, will be
tested and used as adjuvant substances for traditional therapy with Temodal.
In this
project the investigator intends to use coumaric acid.
1. Evaluate the effect of coumaric acid on the proliferation of human glioblastoma
cells: primary and continuous lines;
2. Investigate the mechanisms triggered by coumaric acid in the neoplastic cell to
block its growth. Analyze the expression of regulatory cell cycle proteins in human
glioblastoma cells after treatment with coumaric acid at various concentrations.
3. Evaluate the growth of human glioblastoma cells in an animal model (naked CD1 mice
inoculated with a continuous line of human glioblastoma U87MG cells) and after
coumaric acid treatment.
